Filed under: Software, Education, Reviews
Back To School: Mac research tools
TUAW's going Back to School! We'll be bringing you tips and reviews for students, parents and teachers right up until the bell rings in September. Read on for high school & college-level help.
At any level of schooling, you eventually have to do a little research. There are probably those who caution against doing any of that research on the web, but if you're aware that faulty (and downright false) information exists and take the extra steps to ensure that what you're citing is verifiable, the net can be a treasure trove of information.
Scouring the Net
Finding the information you need is, obviously, the first step. If your learning institution has access to specialized information repositories, your job may be easier when it comes to citing sources and finding relevant articles. For the rest of us, sources such as Wikipedia and Google Scholar can, in most cases, be a great source of valid and verifiable information. The responsibility to verify sources and make sure the information collected has proper citations lies with the researcher.
You can, of course, do all of your online research in your favorite web browser. Some desktop tools, though, can provide faster and more intuitive means of navigating and collecting information.
Pathway
Pathway is a free tool for navigating and collecting information from Wikipedia. It creates "webs" of pages, allowing you to map your trail through the wiki's articles. You start with a search, and the search result creates the center node of the map. Satellite links are created from the table of contents for the page, and following any of them creates a new node, linked to the originating page and with its own satellite links.
Your path can be traced and retraced with great ease. Each page you view is shown in a separate pane, with a linked table of contents in a side drawer and the ability to add notes, grab images and even attach files to each article. Pages and page webs can be saved or exported for later reference.
Selenium
Selenium is an interesting tool. For $15US you get an all-in-one research tool. Much like the old TV/VCR combos, though, the all-in-one solution doesn't necessarily provide a top-quality solution for each of its included functions. Selenium combines a browser, a PDF manager (with annotation capabilities), an outliner, a Cocoa rich text editor, and bibliography manager. I wouldn't recommend it for writing a thesis, but for the average paper it can be a great way to bring all the necessary tools together in a single window (and for a reasonable price). I especially appreciate its ability to capture PDFs from web pages and annotate them. It also manages citations, and if you drag a quote from a web page in the integrated browser, it can automatically append a citation to your current document. Additionally, it interfaces fairly well with Google Docs, which provides document sharing and online storage possibilities. As a side note, I sometimes use Selenium for blogging, and have created a citation style for it which inserts Markdown links.
DevonAgent
DEVONagent will cost you a little more, but provides some very impressive tools for mining the web. It retails at $49.95US, but there's a 25% educational discount available by request. DEVONagent is a whiz at scouring general and specialized online sources, providing intelligent summaries with multiple methods of viewing and navigation. You can see ranked keywords from the search results and a map which shows how they relate. AppleScript and Growl integration, as well as a System Service and Dashboard widget, allow it to integrate with your entire system. It works especially well with DEVONthink, which is available as a bundle with DevonAgent (student discount applies).
There are obviously more tools available for navigating the online information jungle. If you have a favorite, I'd love to hear about it in the comments.
Citing Sources
Once you've found your information, you'll need to provide references. Citing sources is vital to any research paper at any level of education, and any software that can help collect and format online references as citations and bibliographies has the potential to be extremely helpful. The available options range from freeware to software which costs hundreds of dollars. Let's take a quick look at a few of the available applications.
Reference Tracker
Reference Tracker is in beta right now, and is free for the time being (Update: 1.0 hit today and Reference Tracker is available for $29.95US until September 30th). It stores all of the citations in your essay, paper or research project, allowing easy insertion of bibliographic information once the sources have been collected. It can automatically format the citations as Harvard or American Psychological Association (APA) references. With its built in publication search engine and ISBN lookup feature, it makes locating journal articles and books a cinch, automatically pulling the information necessary to cite your source. It can also reference the current page in Safari and Firefox with a single click (although I didn't get it working with Firefox 3, yet). It also provides a folder system which allows groups of references to be output separately, which is ideal for large, multi-chapter projects. Sticky notes can be appended to any citation.
Bookends
Bookends is a popular reference manager with a full set of features. Its extensible collection of citation formats can output your references in just about any accepted style. It also provides built in internet search tools and does a great job of organizing and searching your reference collection as it builds. It provides automatic downloads of the original sources as well as file attachment and annotation capabilities, making the job of building a bibliography that much easier. With the available academic discount, you can pick up Bookends for $69US. Sonny Software, authors of Bookends, also provide a standalone version of just the search features of Bookends for free. It's called Reference Miner and is available at their website.
BibDesk
If you're familiar with the TeX typesetting system, or willing to learn, then BibDesk is an excellent (free) tool for searching, collecting, organizing and outputting bibliographic references. It uses the BibTeX file format, and integrates well with LaTeX. If you do a lot of research writing and aren't familiar with TeX, have a look. BibDesk makes the process easy and can output a large number of formats. BibDesk covers a large chunk of the functionality found in the commercial reference managers, including online search, file attachments, automatic citation generation and more. It's also AppleScriptable.
CiteInPages
CiteInPages is a free set of AppleScripts which integrate BibDesk with Apple's Pages word processor. They replace BibDesk's working citations with numbered or author-date citations inline, and create an ordered bibliography which is appended to your Pages document. If you use BibDesk and Pages, it could be a real time-saver.
Zotero
It's not Mac-specific, but I have to mention Zotero, a Firefox plugin which collects links, files, editable web archives, annotations, notes and more in a taggable, sortable and searchable database. It can automatically pull citations from certain sources, and can output a wide variety of citation formats. You can add additional formats, or even create your own. For a Firefox plugin, it's extremely impressive.
There are plenty of applications, widgets and, yes, websites which are designed to make online research and reference as simple as possible. I've covered a few here, but I'd love to hear about any standouts in the field which I may be overlooking. Happy researching, and hopefully, with the right tools, you won't dread your next 10-page assignment quite as much. We'll be taking a look at some great writing tools to accompany the research tools soon!

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Reader Comments (Page 1 of 2)
Jurgen said 3:10PM on 8-13-2008
How could you leave out Papers?!
They even won a Apple Design Award in 2007 with it!
http://mekentosj.com/papers/
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NM said 7:24PM on 8-13-2008
Totally agree... Papers is amazing
Bassir said 3:13PM on 8-13-2008
So, uh, which is the best researching tool?
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00011000 said 3:32PM on 8-13-2008
very very useful, thank you.
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marcus3140 said 3:32PM on 8-13-2008
The ultimate app would have to be Scrivener: http://www.literatureandlatte.com/scrivener.html
-Marcus
http://www.lamarcus-bolton.net
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Brett Terpstra said 7:05PM on 8-13-2008
I'm in complete agreement. This whole post (and most of my feature-length posts) was written in Scrivener. I'm very much looking forward to the "Writing Tools" installment!
FunFred said 3:33PM on 8-13-2008
What?! You forgot to mention bibme.org!
Bibme is quite simply amazing.
You also forgot Google Docs and Notebook (although personally I think Notebook is only okay).
All free, by the way.
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Mo said 3:42PM on 8-13-2008
Likewise, slightly surprised to not see Papers mentioned here (and the more people that know about it, the more people who might write some good plug-ins, too…)
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Ezra Mechaber said 3:45PM on 8-13-2008
More of these features please, I love the "roundups," especially when it comes to productivity and tools that make procrastination seem like I'm doing more work!
Seriously though, the Back-To-School articles are always interesting.
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Geoff said 3:53PM on 8-13-2008
Nothing compares to Endnote if you must "Cite While You Write" in Word. I've used it for countless Turabian styled papers over the past two years.
Unfortunately, while there is a "duct tape patch" that allows Endnote X1 to work with Word 2008's new architecture, the natively 2008-friendly Endnote X2 is not available quite yet for Mac. I assume they're probably straining to push it out the door by the time school starts, or soon thereafter.
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Mark S said 3:54PM on 8-13-2008
Circus Ponies Notebook is a must have. DEVONthink Personal or Pro are also very necessary. They both work fantastically with DEVONagent.
I would also add MindNode for basic mindmaps since it is free.
http://www.mindnode.com/
http://www.circusponies.com/
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Brett Terpstra said 4:16PM on 8-13-2008
The more organization-oriented apps are going to get their own post, and Papers and Skim get their own category as well. Circus Ponies Notebook, VoodooPad, etc. will have a very special Note-taking feature. So much fun, so little time :).
Ben W said 4:05PM on 8-13-2008
Please, for the love of god, realize that Wikipedia is NOT a source students should be using/citing for research. Wikipedia is an encyclopedia--it is not very useful for academic research, nor is any encyclopedia. If you are finding things in Wikipedia you feel like citing, the problem is not the editable-ness of Wikipedia, but instead an inadequately complex argument. Do NOT use it.
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Cycomachead said 5:01PM on 8-13-2008
(Whoa new comment box)
Anyway, it depends upon the research you are doing. Wikipedia can be quite useful!
However, should you find something useful on Wikipedia look for the number in [] at the end of a sentence which will link you to the original source.
Also if you have time while doing research it's nice to add back to wikipedia.
Frans said 4:06PM on 8-13-2008
Thx, found a few really helpful tools this way.
As reference manager I've tested Sente, Endnote and Bookends. Sente wins hands down, should be in your overview.
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Jake said 4:22PM on 8-13-2008
I believe at most school you are not allowed to cite Wikipedia, or at least not mine.
Thanks for the round up very interesting.
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david said 5:08PM on 8-13-2008
Ben W - Wikipedia isn't a source I'd want any of my students to cite, but it is a great place to start. As a "when you don't even know what you don't know" starting point, it is often a great place to start.
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Palms831 said 5:20PM on 8-13-2008
Pathway and wikipedia don't seem to like each other. Whenever I use the new page button in the toolbar, wikipedia gives me an error, and the search results contain html tags which the app should be able to parse out.
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Brett Terpstra said 7:03PM on 8-13-2008
I haven't had any problem using the English version (en.wikipedia...). Are you using an internationalized version of Wikipedia?
Matt said 5:32PM on 8-13-2008
Citing Wikipedia is banned full stop at my university and im pretty sure it is in most other UK universities and others around the world. So thats definitely a no-no. The other apps seem interesting, Reference Tracker and BookEnds look like they could come in useful and maybe DEVONagent too.
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